datapplab/pathview: a tool set for pathway based data integration and visualization
Pathview is a tool set for pathway based data integration and visualization. It maps and renders a wide variety of biological data on relevant pathway graphs. All users need is to supply their data and specify the target pathway. Pathview automatically downloads the pathway graph data, parses the data file, maps user data to the pathway, and render pathway graph with the mapped data. In addition, Pathview also seamlessly integrates with pathway and gene set (enrichment) analysis tools for large-scale and fully automated analysis.
Getting started
Browse package contents
Package details |
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| Author | Weijun Luo |
| Bioconductor views | DifferentialExpression GeneExpression GeneSetEnrichment Genetics GraphAndNetwork Metabolomics Microarray Pathways Proteomics RNASeq Sequencing SystemsBiology Visualization |
| Maintainer | Weijun Luo <luo_weijun@yahoo.com> |
| License | GPL (>=3.0) |
| Version | 1.43.1 |
| URL | https://github.com/datapplab/pathview https://pathview.uncc.edu/ |
| Package repository | View on GitHub |
| Installation |
Install the latest version of this package by entering the following in R:
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