API for davetgerrard/GenomicLayers
Simple, sequence-based simulation of epi-genomes.
| Global functions | |
|---|---|
| GSM1182890_d3.xist.mus.meanScores | Man page |
| af.factorSet | Source code |
| assignListNodeByCharacter | Source code |
| buildMutationSkeleton | Source code |
| calcConfMat.GR | Source code |
| checkBfAgainstLayerSet | Source code |
| createBindingFactor.DNA_consensus | Man page Source code |
| createBindingFactor.DNA_motif | Man page Source code |
| createBindingFactor.DNA_regexp | Man page Source code |
| createBindingFactor.layer_region | Man page Source code |
| createLayerList.DNAstring | Man page Source code |
| createLayerSet.BSgenome | Man page Source code |
| createRandomBindingFactor | Man page Source code |
| generateHitsCache | Man page Source code |
| getListNodeByCharacter | Source code |
| keepBSgenomeSequences | Man page Source code |
| matchBindingFactor | Man page Source code |
| matchBindingFactor.BSgenome | Man page Source code |
| matchRegExp.BSgenome | Source code |
| modifyLayerByBindingFactor.BSgenome | Man page Source code |
| modifyLayerByBindingFactor.Views | Man page Source code |
| mutateBindingFactor | Source code |
| mutateFactorSet | Source code |
| optimiseFactorSet | Source code |
| plot.factorSet | Man page Source code |
| plot.layerBindingHistory | Source code |
| plot.score.hits | Source code |
| plotLayers | Source code |
| print.bfSet | Man page Source code |
| randGranges | Source code |
| randGrangesBigGenome | Man page Source code |
| recurseListNames | Source code |
| removeGRangesBySize | Source code |
| removeShortGRanges | Source code |
| runLayerBinding | Man page Source code |
| runLayerBinding.BSgenome | Man page Source code |
| windowMean | Source code |
| windowWidth | Source code |
