matchBindingFactor: Find matches for a binding factor on a layer set

In davetgerrard/GenomicLayers: Simple, sequence-based simulation of epi-genomes.

Find matches for a binding factor on a layer set

Description

Generate a list of matches for a binding factor against a layerSet object.

Usage

matchBindingFactor(
  layerSet,
  bindingFactor,
  clusterGap = 10,
  max.window = 1e+07,
  verbose = FALSE
)

Arguments

layerSet	the "layerSet" target
bindingFactor	the "bindingFactor" to match
clusterGap	=10 NOT IMPLEMENTED
max.window	=10000000 on less powerful computers, break up the search into windows of this size.
verbose	output more information to the screen

Value

"hits"

Examples

x <- 1   # great!

davetgerrard/GenomicLayers documentation built on May 18, 2024, 3:24 p.m.