Files in davetgerrard/kanute
What the package does (one line)
ChangeLog
DESCRIPTION
NAMESPACE
R/Kanute.R
R/compareTests.R
R/compileTestResults.R
R/convertLinkToRelative.R
R/createTestDir.R
R/createTestLinks.R
R/findTestOutputs.R
R/generateReports.R
R/kanuteReport.R
R/plot.TestLibrary.R
R/plot.versionTest.R
R/scanTestDir.R
README
TestFolder/bowtie.KanuteReport.txt
TestFolder/bowtie2.KanuteReport.txt
TestFolder/exampleSetUp.txt
TestFolder/inputs/HenryV.txt
TestFolder/inputs/local_log
TestFolder/inputs/simple.bam
TestFolder/inputs/simple.bam.bai
TestFolder/inputs/simple.bed
TestFolder/inputs/simple.chrom.sizes
TestFolder/inputs/simple.sam
TestFolder/inputs/single_read_1.fastq
TestFolder/inputs/tinyGenome.1.bt2
TestFolder/inputs/tinyGenome.1.ebwt
TestFolder/inputs/tinyGenome.2.bt2
TestFolder/inputs/tinyGenome.2.ebwt
TestFolder/inputs/tinyGenome.3.bt2
TestFolder/inputs/tinyGenome.3.ebwt
TestFolder/inputs/tinyGenome.4.bt2
TestFolder/inputs/tinyGenome.4.ebwt
TestFolder/inputs/tinyGenome.fa
TestFolder/inputs/tinyGenome.rev.1.bt2
TestFolder/inputs/tinyGenome.rev.1.ebwt
TestFolder/inputs/tinyGenome.rev.2.bt2
TestFolder/inputs/tinyGenome.rev.2.ebwt
TestFolder/kanuteReports.html
TestFolder/kanuteReports.md
TestFolder/multiBamCov.KanuteReport.txt
TestFolder/outputs/bowtie/0.12.7/single_read1.sam
TestFolder/outputs/bowtie/0.12.7/single_read2.sam
TestFolder/outputs/bowtie/0.12.7/version.out
TestFolder/outputs/bowtie/0.12.8/single_read1.sam
TestFolder/outputs/bowtie/0.12.8/single_read2.sam
TestFolder/outputs/bowtie/0.12.8/version.out
TestFolder/outputs/bowtie/0.12.9/single_read1.sam
TestFolder/outputs/bowtie/0.12.9/single_read2.sam
TestFolder/outputs/bowtie/0.12.9/version.out
TestFolder/outputs/bowtie/1.0.0/single_read1.sam
TestFolder/outputs/bowtie/1.0.0/single_read2.sam
TestFolder/outputs/bowtie/1.0.0/version.out
TestFolder/outputs/bowtie/1.0.1/single_read1.sam
TestFolder/outputs/bowtie/1.0.1/single_read2.sam
TestFolder/outputs/bowtie/1.0.1/version.out
TestFolder/outputs/bowtie2/2.0.0-beta6/single_read1.sam
TestFolder/outputs/bowtie2/2.0.0-beta6/single_read2.sam
TestFolder/outputs/bowtie2/2.0.0-beta6/version.out
TestFolder/outputs/bowtie2/2.0.0-beta7/single_read1.sam
TestFolder/outputs/bowtie2/2.0.0-beta7/single_read2.sam
TestFolder/outputs/bowtie2/2.0.0-beta7/version.out
TestFolder/outputs/bowtie2/2.0.2/single_read1.sam
TestFolder/outputs/bowtie2/2.0.2/single_read2.sam
TestFolder/outputs/bowtie2/2.0.2/version.out
TestFolder/outputs/bowtie2/2.0.5/single_read1.sam
TestFolder/outputs/bowtie2/2.0.5/single_read2.sam
TestFolder/outputs/bowtie2/2.0.5/version.out
TestFolder/outputs/bowtie2/2.1.0/single_read1.sam
TestFolder/outputs/bowtie2/2.1.0/single_read2.sam
TestFolder/outputs/bowtie2/2.1.0/version.out
TestFolder/outputs/bowtie2/2.2.0/single_read1.sam
TestFolder/outputs/bowtie2/2.2.0/single_read2.sam
TestFolder/outputs/bowtie2/2.2.0/version.out
TestFolder/outputs/bowtie2/2.2.1/single_read1.sam
TestFolder/outputs/bowtie2/2.2.1/single_read2.sam
TestFolder/outputs/bowtie2/2.2.1/version.out
TestFolder/outputs/bowtie2/2.2.2/single_read1.sam
TestFolder/outputs/bowtie2/2.2.2/single_read2.sam
TestFolder/outputs/bowtie2/2.2.2/version.out
TestFolder/outputs/bowtie2/2.2.3/single_read1.sam
TestFolder/outputs/bowtie2/2.2.3/single_read2.sam
TestFolder/outputs/bowtie2/2.2.3/version.out
TestFolder/outputs/bowtie2/current/single_read1.sam
TestFolder/outputs/bowtie2/single_read1.out
TestFolder/outputs/bowtie2/single_read1.sam
TestFolder/outputs/cat/cat_generic.out
TestFolder/outputs/cat/cat_text_generic.out
TestFolder/outputs/gcc/gcc_generic.out
TestFolder/outputs/multiBamCov/2.17.0/simpleBamSimpleBed.counts
TestFolder/outputs/multiBamCov/2.17.0/version.out
TestFolder/outputs/multiBamCov/2.18.2/simpleBamSimpleBed.counts
TestFolder/outputs/multiBamCov/2.18.2/version.out
TestFolder/outputs/multiBamCov/2.19.1/simpleBamSimpleBed.counts
TestFolder/outputs/multiBamCov/2.19.1/version.out
TestFolder/outputs/multiBamCov/2.21.0/simpleBamSimpleBed.counts
TestFolder/outputs/multiBamCov/2.21.0/version.out
TestFolder/outputs/multiBamCov/2.22.0/simpleBamSimpleBed.counts
TestFolder/outputs/multiBamCov/2.22.0/version.out
TestFolder/outputs/multiBamCov/current/simpleBamSimpleBed.counts
TestFolder/outputs/multiBamCov/current/version.out
TestFolder/outputs/tophat2/2.0.0/version.out
TestFolder/outputs/tophat2/2.0.10/version.out
TestFolder/outputs/tophat2/2.0.11/version.out
TestFolder/outputs/tophat2/2.0.6/version.out
TestFolder/outputs/tophat2/2.0.8/version.out
TestFolder/outputs/tophat2/2.0.9/version.out
TestFolder/reports/bowtie.KanuteReport.html
TestFolder/reports/bowtie.KanuteReport.md
TestFolder/reports/bowtie.report.Rmd
TestFolder/reports/bowtie2.KanuteReport.html
TestFolder/reports/bowtie2.KanuteReport.md
TestFolder/reports/example.Rmd
TestFolder/reports/example.html
TestFolder/reports/example.md
TestFolder/reports/kanuteReports.Rmd
TestFolder/reports/kanuteReports.html
TestFolder/reports/multiBamCov.KanuteReport.html
TestFolder/reports/multiBamCov.KanuteReport.md
TestFolder/reports/testReport.html
TestFolder/reports/testReport.md
TestFolder/testOut.txt
TestFolder/testReport.txt
TestFolder/tests/bowtie/bowtie.versions
TestFolder/tests/bowtie/bowtie_singleRead_1.generic.test.sh
TestFolder/tests/bowtie/bowtie_singleRead_2.generic.test.sh
TestFolder/tests/bowtie/bowtie_version.generic.test.sh
TestFolder/tests/bowtie/run.all.sh
TestFolder/tests/bowtie/test.list
TestFolder/tests/bowtie2/bowtie2.versions
TestFolder/tests/bowtie2/bowtie2_singleRead_1.generic.test.sh
TestFolder/tests/bowtie2/bowtie2_singleRead_1.sh
TestFolder/tests/bowtie2/bowtie2_singleRead_2.generic.test.sh
TestFolder/tests/bowtie2/bowtie2_version.generic.test.sh
TestFolder/tests/bowtie2/run.all.sh
TestFolder/tests/bowtie2/test.list
TestFolder/tests/cat/cat_text_generic.sh
TestFolder/tests/cat/cat_version_generic.sh
TestFolder/tests/fastqc/fastqc.versions
TestFolder/tests/gcc/gcc_version_generic.sh
TestFolder/tests/multiBamCov/multiBamCov.versions
TestFolder/tests/multiBamCov/multiBamCov_countSimpleBamSimpleBed.generic.test.sh
TestFolder/tests/multiBamCov/multiBamCov_version.generic.test.sh
TestFolder/tests/multiBamCov/run.all.sh
TestFolder/tests/multiBamCov/test.list
TestFolder/tests/test.mappings
TestFolder/tests/tophat/setup.log
TestFolder/tests/tophat/tophat.versions
TestFolder/tests/tophat2/Aligned.out.sam
TestFolder/tests/tophat2/Log.out
TestFolder/tests/tophat2/Log.progress.out
TestFolder/tests/tophat2/run.all.sh
TestFolder/tests/tophat2/test.list
TestFolder/tests/tophat2/tophat2.versions
TestFolder/tests/tophat2/tophat2_singleRead_1.generic.test.sh
TestFolder/tests/tophat2/tophat2_version.generic.test.sh
TestFolder/tests/trimmomatic/trimmomatic.versions
dev.log.txt
man/Kanute-package.Rd
man/compareTests.Rd
man/compileTestResults.Rd
man/convertLinkToRelative.Rd
man/createTestLinks.Rd
man/findTestOutputs.Rd
man/plot.testLibrary.Rd
man/plot.versionTest.Rd
man/scanTestDir.Rd
scripts/bothMakeAndSendReport.sh
scripts/kanute_funcs.R
scripts/kanute_scratchbox.R
scripts/makeReport.sh
scripts/sendToHost.sh
