calc.Eall | Internal function. Calculate total exposed when m>1 in a... |
calc.Iall | Internal function. Calculate total prevalence when n>1 in a... |
calc.Jall | Internal function. Calculate total incidence when n>1 in a... |
GI.bck | Internal function. Calculate the _backward_ generation... |
GI.bck.discrete | Internal function. Calculate the _backward_ generation... |
gi_ct_fit | Fit R0 and mean generation interval from contact tracing data |
gi_ct_fit_mle2 | Fit R0 and mean generation interval from contact tracing data |
gi.distrib | Internal function. Discrete generation interval distribution. |
GI.fwd | Internal function. Calculate the _forward_ generation... |
GI.fwd.discrete | Internal function. Calculate the _forward_ generation... |
GI.intrinsic | Internal function. Calculate intrinsic generation interval... |
GI.resude | Generation interval distribution for the RESuDe epidemic... |
GI.seminr | Calculates the intrinsic, forward and backward generation... |
nllk | Negative Log-Likelihood given R0 and mean generation interval... |
RESuDe.simulate | Internal function. Simulation with the Renewal Equation with... |
SEmInR.FX | Internal function. Simulate a SEmInR model. |
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