Fit R0 and mean generation interval from contact tracing data
1 2 | gi_ct_fit_mle2(t.obs, gi.obs, model.epi, fxd.prm, start.optim, CI = 0.95,
do.plot = FALSE)
|
t.obs |
Numeric vector. Time when the backward generation intervals were observed |
gi.obs |
Numeric vector. Backward generation intervals observed. |
model.epi |
String. Epidemic model used. Choice between |
fxd.prm |
List. Parameters of |
CI |
Numeric. Confidence interval level. Default = 0.95. |
do.plot |
Boolean. Fitting diagnostic plots. Default = TRUE. |
R0.rng |
Numeric vector. Values of R0 explored to calculate the likelihood surface. |
gimean.rng |
Numeric vector. Values of mean intrinsic GI explored to calculate the likelihood surface. |
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