R/barrington_tree-data.R

In davidnipperess/PDcalc: An implementation of the Phylogenetic Diversity (PD) calculus in R

#' Phylogenetic tree of birds of Barrington Tops National Park
#'
#' A phylogenetic tree of bird species observed in Barrington Tops National Park
#' during a survey in November 2012. The tree has 41 tips corresponding to the
#' bird species observed. The tree is a Maximum Clade Credibility tree extracted
#' from the Bayesian supertree published by Jetz et al. (2012).
#'
#' @docType data
#'
#' @usage data(barrington_tree)
#'
#' @format A \code{phylo} object, as used by the \code{ape} package. Branch
#'   lengths are scaled in millions of years since divergence events.
#'
#' @keywords datasets
#'
#' @references \itemize{ \item{Chao A, Chiu CH, Hsieh TC, Davis T, Nipperess DA
#'   & Faith DP (2015) Rarefaction and extrapolation of phylogenetic diversity.
#'   \emph{Methods in Ecology & Evolution} 6: 380-388.} \item{Jetz W, Thomas GH,
#'   Joy JB, Hartmann K & Mooers AO (2012) The global diversity of birds in
#'   space and time. \emph{Nature} 491: 444-448}}
#' 
"barrington_tree"