dePipelineCaller: Differential Expression Pipeline Caller

In dbdimitrov/BugleSeq: BingleSeq RNA-Seq Data Analysis

Description

Function that calls the appropriate DGE pipeline and provides exception handling

Usage

dePipelineCaller(
  filteredCounts,
  metaData,
  testType,
  paramX,
  selectedPackage,
  session,
  useBatch
)

Arguments

testType	The type of test to be used
paramX	Fit type for DESeq2, and normalization method for limma and edgeR
selectedPackage	The package(pipeline) to be executed
session	Current R session
readCounts	The filtered CountTable

Value

Returns the results of the appropriate DE pipeline

dbdimitrov/BugleSeq documentation built on July 17, 2021, 1:02 p.m.