dot-diffExpr: Compute differential expression

Description Usage Arguments Details Value Author(s)

Description

Computes P-value and fold-change between two expression vectors.

Usage

1
.diffExpr(x, y, lod = NULL, alternative = "two.sided")

Arguments

x

Feature expression in condition x

y

Feature expression in condition y

lod

Gene limit of detection

Details

For censored data a Peto-Peto test is performed, for non-censored data a Wilcoxon rank sum test. If limit of detection is provided, expectation maximization is used to compute the fold-change.

Value

A list containing the following components:

p.value

P-value

fold

Fold-change

Author(s)

Daniel C. Ellwanger


dcellwanger/CellTrails documentation built on May 12, 2020, 2:01 a.m.