dot-project_ortho: AUX: Orthogonal projection
In dcellwanger/CellTrails: Reconstruction, visualization and analysis of branching trajectories
Description
Usage
Arguments
Value
Author(s)
Description
Orthogonally projects samples onto trajectory
Usage
1
.project_ortho(cl, g, X)
Arguments
cl
Trajectory states; factor vector
g
Trajectory tree; igraph object
X
Lower dimensional ordination of trajectory samples
Value
A list containing the following components:
Y
Projection
X.c
Mediancentres
lambda
Projection lambda (position: inside/outside of edge)
adjmat
Adjacency matrix with sample count per edge
error
Projection error per sample
edgeId
ID of each edge
edgeId2Edge
Mapping of edge to edgeId
edge
For each sample its assigned edge
Author(s)
Daniel C. Ellwanger
dcellwanger/CellTrails documentation built on May 12, 2020, 2:01 a.m.
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Description Usage Arguments Value Author(s)
Description
Orthogonally projects samples onto trajectory
Usage
1 | .project_ortho(cl, g, X)
|
Arguments
cl |
Trajectory states; factor vector |
g |
Trajectory tree; igraph object |
X |
Lower dimensional ordination of trajectory samples |
Value
A list containing the following components:
|
Projection |
|
Mediancentres |
|
Projection lambda (position: inside/outside of edge) |
|
Adjacency matrix with sample count per edge |
|
Projection error per sample |
|
ID of each edge |
|
Mapping of edge to edgeId |
|
For each sample its assigned edge |
Author(s)
Daniel C. Ellwanger
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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