ddeweerd/MODifieRDB
MODifieRDB

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Functions
144
Source code
20
Man pages
23
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ddeweerd/MODifieRDB: MODifieRDB
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API

API for ddeweerd/MODifieRDB
MODifieRDB

Global functions
MODifieR_input_from_db Man page Source code
MODifieR_module_from_db Man page Source code
MODifieR_object_to_db Man page Source code
MODifieR_object_to_db.MODifieR_input Source code
MODifieR_object_to_db.MODifieR_module Source code
add_tags Source code
add_unique_genes Source code
build_clique_db_db Man page Source code
check_comhub_presence Source code
check_input_object_presence Source code
check_ppi_db_presence Source code
check_ppi_network_presence Source code
clique_sum_db Man page Source code
collapse_genes Source code
comhub_object_from_db Source code
comhub_object_to_db Source code
connect_to_db Man page Source code
correlation_clique_db Man page Source code
create_table Source code
delete_clique_sum_permutation_module Source code
delete_comhub_object Source code
delete_correlation_clique_module Source code
delete_diamond_module Source code
delete_diffcoex_module Source code
delete_enrichment_object Source code
delete_input_object Man page Source code
delete_mcode_module Source code
delete_moda_module Source code
delete_module_discoverer_module Source code
delete_module_object Man page Source code
delete_ppi_from_db Source code
delete_rna_object Source code
delete_tag Source code
delete_wgcna_module Source code
diamond_db Man page Source code
diffcoex_db Man page Source code
disconnect_db Man page Source code
enrichment_object_from_db Source code
enrichment_object_to_db Source code
fetch_clique_sum_permutation_module Source code
fetch_correlation_clique_module Source code
fetch_diamond_module Source code
fetch_diffcoex_module Source code
fetch_mcode_module Source code
fetch_microarray_object Source code
fetch_moda_module Source code
fetch_module_discoverer_module Source code
fetch_rna_object Source code
fetch_wgcna_module Source code
get_available_comhub_objects Source code
get_available_db_networks Man page Source code
get_available_enrichment_objects Source code
get_available_input_objects Man page Source code
get_available_module_objects Man page Source code
get_available_networks Man page Source code
get_available_tags Source code
get_comhub_by_module_name Source code
get_diamond_ignored_genes Source code
get_diamond_seed_genes Source code
get_info_table_correlation_clique Source code
get_info_table_diamond Source code
get_info_table_diffcoex Source code
get_info_table_microarray Source code
get_info_table_moda Source code
get_info_table_ppi_network Source code
get_info_table_rna Source code
get_info_table_wgcna Source code
get_input_name_by_enrichment_row Source code
get_input_type Source code
get_main_input_register_row Source code
get_main_module_register_row Source code
get_module_genes Source code
get_module_type Source code
get_register_row Source code
get_table_hash Source code
get_tag Source code
get_tags_for_input Source code
get_unique_genes Man page Source code
match_db_loc_to_ppi Source code
match_ppi_to_db_loc Source code
mcode_db Man page Source code
mcode_get_module_list Source code
moda_db Man page Source code
moda_get_module_list Source code
modulediscoverer_db Man page Source code
ppi_db_to_db Source code
ppi_network_from_db Man page Source code
ppi_network_to_db Man page Source code
prepare_comhub_register Source code
prepare_enrichment_register Source code
prepare_ignored_genes Source code
prepare_input_settings_for_db Source code
prepare_input_settings_for_db.Clique_Sum_permutation Source code
prepare_input_settings_for_db.Correlation_clique Source code
prepare_input_settings_for_db.DIAMOnD Source code
prepare_input_settings_for_db.DiffCoEx Source code
prepare_input_settings_for_db.MODA Source code
prepare_input_settings_for_db.Mcode Source code
prepare_input_settings_for_db.MicroArray Source code
prepare_input_settings_for_db.RNA_seq Source code
prepare_input_settings_for_db.WGCNA Source code
prepare_input_settings_for_db.module_discoverer Source code
prepare_module_genes_row Source code
prepare_seed_genes Source code
read_sql Source code
reconstruct_microarray_setting Source code
uncollapse_genes Source code
wgcna_db Man page Source code
write_hash_tables_to_db Source code
write_table_to_hash Source code
write_to_db Source code
write_to_db.Clique_Sum_permutation Source code
write_to_db.Correlation_clique Source code
write_to_db.DIAMOnD Source code
write_to_db.DiffCoEx Source code
write_to_db.MODA Source code
write_to_db.Mcode Source code
write_to_db.MicroArray Source code
write_to_db.RNA_seq Source code
write_to_db.WGCNA Source code
write_to_db.module_discoverer Source code
ddeweerd/MODifieRDB documentation built on Feb. 5, 2021, 1:50 a.m.

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