clique_sum_db: Clique SuM function wrapper

In ddeweerd/MODifieRDB: MODifieRDB

Description

Clique SuM function wrapper

Usage

clique_sum_db(
  input_name,
  ppi_name,
  n_iterations = 1e+05,
  to_db = TRUE,
  folder = NULL,
  clique_significance = 0.01,
  min_clique_size = 2,
  multiple_cores = T,
  n_cores = 4,
  module_name,
  con
)

Arguments

input_name	Name of the input object in the database
ppi_name	Name of the PPI network in the database
n_iterations	Number of iterations to be performed for the permutation based p-value
to_db	Save result in database, default is TRUE
folder	If not saved in database, folder where to save the module as .rds
clique_significance	p-value for cliques to be considered significant
min_clique_size	Minimal size for cliques
multiple_cores	Parallel process using multiple cores?
n_cores	Number of cores to use
module_name	Unique name for the module object when stored in database
con	Database connection obtained with connect_to_db function

Details

Retrieves a MODifieR input object from database by input_name and runs clique_sum_permutation method.

ddeweerd/MODifieRDB documentation built on Feb. 5, 2021, 1:50 a.m.