Man pages for debsin/dropClust
Single Cell Transcriptome Analysis
| Cluster | Clustering of samples |
| Correction | Correct for batch effects |
| CountNormalize | Normalize a SingleCellExperiment object using total counts |
| dot-annPartition | ANN Graph Partition |
| dot-reduce_mat_de | Reduce large matrix for DE analysis |
| dropClust | dropClust |
| FilterCells | Filter out poor quality cells |
| FilterGenes | Filter out poor quality genes |
| FindMarkers | Find DE genes |
| getColors | Select custom colours |
| Log2Normalize | Compute log normalized expression values from count data in a... |
| Merge | Merge datasets into one by determining a common genes |
| PlotEmbedding | Two Dimensional Embedding for Visualization |
| PlotHeatmap | Build heatmap object |
| PlotMarkers | Violin Plot |
| RankGenes | Find highly variable genes |
| RankPCAGenes | Select PCA based Genes |
| readfiles | Read data |
| Sampling | Sampling Primary Clusters |
| ScatterPlot | Plotting cells |
