readfiles: Read data

In debsin/dropClust: Single Cell Transcriptome Analysis

Description

Read 10X or csv data,

Usage

readfiles(paths = NULL, format = "10x", ...)

Arguments

paths	a path or a list of paths to the csv file/s, or the directory location/s containing the 10X files: matrix.mtx, sparse matrix format file genes.tsv, gene names tab-separated file barcodes.tsv, barcodes tab-separated file ; with format="txt", specify the location of the csv matrix file.
format	One of c("10X", "txt"). Defaults to "10X".
...	pass specific arguments to the read.csv() function when format = "txt".

Details

Loads expression data from 10X format directory or csv file as specified. The rows in the matrix are considered genes; the columns represent samples

Value

SingleCellExperiment object.

debsin/dropClust documentation built on Nov. 4, 2019, 10:22 a.m.