R/data.R

In definitelysean/sgaphd: Sean Gets A PhD: Research Convenience Functions

#' All of the Gene Set Collections from the Broad Institutes MSigDB
#'
#' A collated version of all the gene set collections created by the Broad Institute.
#' Generated by downloading the Entrez .gmt's for each gene set, parsing them with 
#' roller, and concatenating them al together.
#' Useful for GSEA and GSVA shotguns!
#'
#' @format A list with 8 elements, whi:
#' \describe{
#'   \item{C1}{C1 Collection Gene Sets}
#'   \item{C2}{C2 Collection Gene Sets}
#'   \item{C3}{C3 Collection Gene Sets}
#'   \item{C4}{C4 Collection Gene Sets}
#'   \item{C5}{C5 Collection Gene Sets}
#'   \item{C6}{C6 Collection Gene Sets}
#'   \item{C7}{C7 Collection Gene Sets}
#'   \item{Hallmark}{Hallmark Collection Gene Sets}
#' }
#' @source \url{http://software.broadinstitute.org/gsea/msigdb/}
"all.msigdb.gene.sets"