wTO.rep_measure: wTO.rep_measure

In deisygysi/wTO: Computing Weighted Topological Overlaps (wTO) & Consensus wTO Network

wTO.rep_measure

Description

Compute the wTO for a repeated measures expermiment and also the bootstraps. Proposed at arXiv:1711.04702. This is a quicker version of the wTO.Complete. It doesn'T contain diagnose plots nor a parallel version.

Usage

wTO.rep_measure(
  Data,
  Overlap = row.names(Data),
  ID,
  sign = "sign",
  delta = 0.2,
  n = 10
)

Arguments

Data	data.frame containing the count / expression data for the correlation.
Overlap	Set of nodes of interest, where the Overlapping weights will be computed.
ID	a vector with the individuals identification
sign	Should the wTO be signed?
delta	expected difference between the real wTO and the bootstraped.
n	Number of resamplings, used to compute the empirical distribuitions of the links. Default is set to 100.

Author(s)

Deisy Morselli Gysi <deisy at bioinf.uni-leipzig.de>

Examples

#wTO.rep_measure(Data = Microarray_Expression1, ID = rep(c(1:9),2), 
#Overlap = ExampleGRF$x)

deisygysi/wTO documentation built on May 25, 2022, 2:46 a.m.