README.md

In demar01/RICdata: Data accompanying the RIC package

RICdata

RICdata package

RICdata is a experimental package that contains the data for RIC analysis.

Installation

install_github("demar01/RICdata")

Once installed, load the package

library("RICdata")

Datasets included

|Data |Description | |:-----------------------|:--------------------------------------------------------------------------------------------------------------------| |WCLpeptides.raw |Whole cell lysate proteomes of SINV-infected cells from Garcia-Moreno et al. 2019 | |RICpeptides.raw |RNA-bound proteomes of SINV-infected cells from Garcia-Moreno et al. 2019 | |ENSG2category |ENSG annotation with GO categories from mRNAinteractomeHeLa | |miniProtFeatures |Reduced protein feature annotation from RBDmap | |Index |Index annotation of amino acid 4kmer length |

Data loading and information

Load data is loaded into R by typing

data("WCLpeptides.raw")

To get more information about each dataset, see its manual page

?WCLpeptides.raw  
## or
help("WCLpeptides.raw")

demar01/RICdata documentation built on Feb. 9, 2021, 9:18 p.m.