RICpeptides.raw: RNA-bound proteomes of a SILAC experiment of SINV-infected...
In demar01/RICdata: Data accompanying the RIC package
Description
Usage
Format
Value
Source
Description
The dataset contains the peptide.txt output file from
MaxQuant.
Usage
1
Format
A dataframe with 6909 rows and 151 variables:
- Sequence
The identified AA sequence of the peptide.
- Length
The length of the sequence stored in the column 'Sequence'.
- Proteins
Identifiers of proteins this site is associated with..
- “Intensity L ” + A/B/C exp
Summed up eXtracted Ion Current (XIC) of the isotopic cluster linked to the light label partner.
- “Intensity M ” + A/B/C exp
Summed up eXtracted Ion Current (XIC) of the isotopic cluster linked to the medium label partner.
- “Intensity H ” + A/B/C exp
Summed up eXtracted Ion Current (XIC) of the isotopic cluster linked to the heavy label partner.
Value
A data.frame.
Source
Garcia-Moreno et al 2019.
System-wide Profiling of RNA-Binding Proteins Uncovers Key Regulators of Virus Infection.
Molecular Cell 2019 Apr 4;74:196-211.e11
10.1016/j.molcel.2019.01.017.
demar01/RICdata documentation built on Feb. 9, 2021, 9:18 p.m.
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Description Usage Format Value Source
Description
The dataset contains the peptide.txt output file from MaxQuant.
Usage
1 |
Format
A dataframe with 6909 rows and 151 variables:
- Sequence
The identified AA sequence of the peptide.
- Length
The length of the sequence stored in the column 'Sequence'.
- Proteins
Identifiers of proteins this site is associated with..
- “Intensity L ” + A/B/C exp
Summed up eXtracted Ion Current (XIC) of the isotopic cluster linked to the light label partner.
- “Intensity M ” + A/B/C exp
Summed up eXtracted Ion Current (XIC) of the isotopic cluster linked to the medium label partner.
- “Intensity H ” + A/B/C exp
Summed up eXtracted Ion Current (XIC) of the isotopic cluster linked to the heavy label partner.
Value
A data.frame.
Source
Garcia-Moreno et al 2019. System-wide Profiling of RNA-Binding Proteins Uncovers Key Regulators of Virus Infection. Molecular Cell 2019 Apr 4;74:196-211.e11 10.1016/j.molcel.2019.01.017.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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