WCLpeptides.raw: Whole cell lysate proteomes of a SILAC experiment of...

Description Usage Format Value Source

Description

The dataset contains the peptide.txt output file from MaxQuant.

Usage

1

Format

A dataframe with 25136 rows and 148 variables:

Protein.IDs

Uniprot IDs

Sequence

The identified AA sequence of the peptide.

Length

The length of the sequence stored in the column 'Sequence'.

Proteins

Identifiers of proteins this site is associated with..

Intensity L + M_4_18/18_M_4/4_18_M exp

Summed up eXtracted Ion Current (XIC) of the isotopic cluster linked to the light label partner.

Intensity M + M_4_18/18_M_4/4_18_M exp

Summed up eXtracted Ion Current (XIC) of the isotopic cluster linked to the medium label partner.

Intensity H + M_4_18/18_M_4/4_18_M exp

Summed up eXtracted Ion Current (XIC) of the isotopic cluster linked to the heavy label partner.

Value

A data.frame

Source

Garcia-Moreno et al 2019. System-wide Profiling of RNA-Binding Proteins Uncovers Key Regulators of Virus Infection. Molecular Cell 2019 Apr 4;74:196-211.e11 10.1016/j.molcel.2019.01.017.


demar01/RICdata documentation built on Feb. 9, 2021, 9:18 p.m.