enrich_1D: 1D enrichment analysis calculated with enrichR
In demar01/protrusionproteome: protrusionproteome

enrich_1D tests for deferentially enriched proteins (1D enrichment).

enrich_1D(
  se,
  timepoint = 5,
  dbs = "GO_Molecular_Function_2018",
  number_dbs = 1
)

`se`	SummarizedExperiment, Data object containing processed proteomics data
`timepoint`	integer Timepoint to do enrichment analysis
`dbs`	Character Character vector of databases to search
`number_dbs`	integer

A tibble with enrichment terms, p-values etc

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if(interactive()){
enrichment_table <- enrich_1D(se,timepoint= 5, dbs ="GO_Molecular_Function_2018",number_dbs=1)
}

demar01/protrusionproteome documentation built on April 29, 2021, 5:47 a.m.

demar01/protrusionproteome index

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