enrich_1D: 1D enrichment analysis calculated with enrichR

Description Usage Arguments Value Examples

Description

enrich_1D tests for deferentially enriched proteins (1D enrichment).

Usage

1
2
3
4
5
6
enrich_1D(
  se,
  timepoint = 5,
  dbs = "GO_Molecular_Function_2018",
  number_dbs = 1
)

Arguments

se

SummarizedExperiment, Data object containing processed proteomics data

timepoint

integer Timepoint to do enrichment analysis

dbs

Character Character vector of databases to search

number_dbs

integer

Value

A tibble with enrichment terms, p-values etc

Examples

1
2
3
if(interactive()){
enrichment_table <- enrich_1D(se,timepoint= 5, dbs ="GO_Molecular_Function_2018",number_dbs=1)
}

demar01/protrusionproteome documentation built on April 29, 2021, 5:47 a.m.