API for deruncie/GridLMM
Efficient Mixed Models for GWAS with multiple Random Effects
| Global functions | |
|---|---|
| Calculate_qt_LASSO | Source code |
| F_hats | Source code |
| GridLMM_GWAS | Man page Source code |
| GridLMM_GWAS_set | Man page Source code |
| GridLMM_ML | Man page Source code |
| GridLMM_SS_downdate_matrix | Source code |
| GridLMM_SS_matrix | Source code |
| GridLMM_posterior | Man page Source code |
| GridLMMnet | Man page Source code |
| GridLMMnet_setup | Source code |
| build_downdate_Xs | Source code |
| calc_LL | Source code |
| calc_LL_parallel | Source code |
| calc_LL_set | Source code |
| calc_ML | Source code |
| calc_REML | Source code |
| calculate_Grid | Source code Source code |
| chol_c | Source code |
| chol_dropRows | Source code |
| chol_update | Source code |
| chol_update2 | Source code |
| chol_update2s | Source code |
| chol_update_L | Source code |
| clean_V_folder | Source code |
| collect_results_GridLMMnet | Source code |
| combine_LDAK_Kinships | Source code |
| compile_results | Source code |
| crossprod_cholR | Source code |
| fit_GridLMM_GWAS | Source code |
| fit_GridLMM_GWAS_set | Source code |
| get_LDAK_result | Source code |
| get_LL | Source code |
| get_current_h2s | Source code |
| get_h2_LDAK | Source code |
| get_h2s_ball | Source code |
| get_h2s_to_test | Source code |
| get_lambda_sequence | Source code |
| log_det_of_XtX | Source code |
| make_V_setup | Source code |
| make_chol_V_setup | Source code |
| make_h2s_matrix | Source code |
| my_detectCores | Man page Source code |
| premultiply_list_of_matrices | Source code |
| prepMM | Source code |
| prep_LDAK_Kinship | Man page Source code |
| prep_h2_LDAK | Source code |
| qq_p_plot | Source code |
| run_GridLMM_GWAS | Source code |
| run_GridLMM_GWAS_set | Source code |
| run_GridLMMnet | Source code |
| run_glmnet_V | Source code |
| scale_SNPs | Source code |
| set_p_test | Man page Source code |
| setup_Grid | Source code |
| start_cluster | Source code |
| stop_cluster | Source code |
| svd_c | Source code |
| time_LDAK | Source code |
