Efficient Mixed Models for GWAS with multiple Random Effects

Global functions | |
---|---|

F_hats | Source code |

GridLMM | Man page |

GridLMM-package | Man page |

GridLMM_GWAS | Man page Source code |

GridLMM_ML | Man page Source code |

GridLMM_SS_downdate_matrix | Source code |

GridLMM_SS_matrix | Source code |

GridLMM_posterior | Man page Source code |

GridLMMnet | Man page Source code |

GridLMMnet_setup | Source code |

build_downdate_Xs | Source code |

calc_LL | Source code |

calc_LL_parallel | Source code |

calc_ML | Source code |

calc_REML | Source code |

calculate_Grid | Source code |

chol_c | Source code |

chol_dropRows | Source code |

chol_update | Source code |

chol_update_L | Source code |

clean_V_folder | Source code |

collect_results_GridLMMnet | Source code |

combine_LDAK_Kinships | Source code |

compile_results | Source code |

crossprod_cholR | Source code |

fit_GridLMM_GWAS | Source code |

get_LL | Source code |

get_current_h2s | Source code |

get_h2_LDAK | Source code |

get_h2s_ball | Source code |

get_h2s_to_test | Source code |

get_lambda_sequence | Source code |

log_det_of_XtX | Source code |

make_V_setup | Source code |

make_chol_V_setup | Source code |

make_h2s_matrix | Source code |

my_detectCores | Man page Source code |

premultiply_list_of_matrices | Source code |

prepMM | Source code |

prep_LDAK_Kinship | Man page Source code |

qq_p_plot | Source code |

run_GridLMM_GWAS | Source code |

run_GridLMMnet | Source code |

run_glmnet_V | Source code |

scale_SNPs | Source code |

set_p_test | Man page Source code |

setup_Grid | Source code |

start_cluster | Source code |

stop_cluster | Source code |

svd_c | Source code |

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