Files in descostesn/ChIPSeqSpike
ChIP-Seq data scaling according to spike-in control

.project
DESCRIPTION
NAMESPACE
NEWS
R/AllClasses.R R/AllGenerics.R R/accessor-methods.R R/constructors.R R/estimateScalingFactors-methods.R R/extractBinding-methods.R R/inputSubtraction-methods.R R/plot-methods.R R/replace-methods.R R/scaling-methods.R R/spikePipe-methods.R
data/ratio.RData
data/result_estimateScalingFactors.RData
data/result_extractBinding.RData
inst/extdata/bam_files/H3K79me2_0_dm3-filtered.bam
inst/extdata/bam_files/H3K79me2_0_hg19-filtered.bam
inst/extdata/bam_files/H3K79me2_100_dm3-filtered.bam
inst/extdata/bam_files/H3K79me2_100_hg19-filtered.bam
inst/extdata/bam_files/H3K79me2_50_dm3-filtered.bam
inst/extdata/bam_files/H3K79me2_50_hg19-filtered.bam
inst/extdata/bam_files/input_0_hg19-filtered.bam
inst/extdata/bam_files/input_100_hg19-filtered.bam
inst/extdata/bam_files/input_50_hg19-filtered.bam
inst/extdata/bigwig_files/H3K79me2_0-filtered.bw
inst/extdata/bigwig_files/H3K79me2_100-filtered.bw
inst/extdata/bigwig_files/H3K79me2_50-filtered.bw
inst/extdata/bigwig_files/input_0-filtered.bw
inst/extdata/bigwig_files/input_100-filtered.bw
inst/extdata/bigwig_files/input_50-filtered.bw
inst/extdata/empty_files/endoBam_empty.bam
inst/extdata/empty_files/exoBam_empty.bam
inst/extdata/empty_files/input.wig_empty.bw
inst/extdata/empty_files/inputwig_empty.bw
inst/extdata/empty_files/inputwig_empty.wig
inst/extdata/empty_files/wig.file_empty.bw
inst/extdata/empty_files/wigfile_empty-RPM.bw
inst/extdata/empty_files/wigfile_empty.bw
inst/extdata/info.csv
inst/extdata/test_coord.gff
man/ChIPSeqSpikeCore.Rd man/ChIPSeqSpikeDataset-class.Rd man/ChIPSeqSpikeDatasetBoost-class.Rd man/ChIPSeqSpikeDatasetList-class.Rd man/ChIPSeqSpikeDatasetListBoost-class.Rd man/Experiment-class.Rd man/ExperimentLoaded-class.Rd man/averageBindingValues.Rd man/bigWigFile.Rd man/boxplotSpike.Rd man/count.Rd man/datasetList.Rd man/estimateScalingFactors.Rd man/exoCount.Rd man/exogenousScalingFactor.Rd man/experimentList.Rd man/exportBigWigs.Rd man/extractBinding.Rd man/getAverageBindingValues.Rd man/getBam.Rd man/getBigWigFile.Rd man/getCount.Rd man/getDatasetList.Rd man/getExoCount.Rd man/getExogenousBam.Rd man/getExogenousScalingFactor.Rd man/getExpName.Rd man/getExperimentList.Rd man/getExperimentListBigWigs.Rd man/getLoadedData.Rd man/getMatBindingValues.Rd man/getRatio.Rd man/getScalingFactor.Rd man/inputSubtraction.Rd man/matBindingValues.Rd man/plotCor.Rd man/plotHeatmaps.Rd man/plotProfile.Rd man/plotTransform.Rd man/ratio.Rd man/result_data.Rd man/scaling.Rd man/scalingFactor.Rd man/spikeDataset.Rd man/spikePipe.Rd man/spikeSummary.Rd tests/testthat.R tests/testthat/test-functions.R tests/testthat/test-getters.R tests/testthat/test-objectsCreation.R tests/testthat/test-setters.R vignettes/ChIPSeqSpike.Rmd vignettes/cor_log.pdf
vignettes/heatmaps_start-2.png
descostesn/ChIPSeqSpike documentation built on Jan. 29, 2018, 3 p.m.