getAverageBindingValues: Get the average binding values associated to a dataset

In descostesn/ChIPSeqSpike: ChIP-Seq data scaling according to spike-in control

Description

Accessor returning the average binding values associated to a dataset.

Usage

getAverageBindingValues(theObject)
            
            
## S4 method for signature 'ChIPSeqSpikeDataset'
getAverageBindingValues(theObject)

## S4 method for signature 'ChIPSeqSpikeDatasetBoost'
getAverageBindingValues(theObject)

## S4 method for signature 'ChIPSeqSpikeCore'
getAverageBindingValues(theObject)

Arguments

theObject

A ChIPSeqSpikeCore, ChIPSeqSpikeDataset or ChIPSeqSpikeDatasetBoost object.

Details

Each element of the list contains the binding values to perform meta-profile (see ?plotProfile); transformation profiles if not in boost mode (see ?plotTransform) and heatmaps (see ?plotHeatmaps). These values are stored in a plotSetArray object. This object is created by the method getPlotSetArray of the 'seqplots' package.

Value

A list of plotSetArray objects.

Author(s)

Nicolas Descostes

See Also

plotProfile plotTransform plotHeatmaps getMatBindingValues getPlotSetArray

Examples

data(result_extractBinding)
getAverageBindingValues(csds[[1]])

descostesn/ChIPSeqSpike documentation built on Aug. 6, 2019, 3:51 p.m.