API for dfjenkins3/TBSignatureProfiler
Profile RNA-Seq Data Using TB Pathway Signatures
| Global functions | |
|---|---|
| .OriginalModel_NoRetraining | Man page Source code |
| .OriginalModel_Retraining | Man page Source code |
| Bootstrap_LOOCV_LR_AUC | Man page Source code |
| COVIDsignatures | Man page |
| LOOAUC_simple_multiple_noplot_one_df | Man page Source code |
| ObtainSampleScore_OriginalModel | Man page Source code |
| OriginalTrainingData | Man page |
| SignatureQuantitative | Man page Source code |
| SulimanOriginalModel | Man page Source code |
| TBSPapp | Man page Source code |
| TB_hiv | Man page |
| TB_indian | Man page |
| TBcommon | Man page |
| TBsignatures | Man page |
| TBsignaturesSplit | Man page |
| addTBsignature | Man page Source code |
| bootstrapAUC | Man page Source code |
| check_sig_env | Source code |
| common_sigAnnotData | Man page |
| compareAlgs | Man page Source code |
| compareBoxplots | Man page Source code |
| cv_glmnet_OriginalModel | Man page Source code |
| deseq2_norm_rle | Man page Source code |
| distinctColors | Man page Source code |
| evaluateOriginalModel | Man page Source code |
| knn_OriginalModel | Man page Source code |
| lda_OriginalModel | Man page Source code |
| mkAssay | Man page Source code |
| noretrain_helper | Source code |
| output_function | Source code |
| plotQuantitative | Man page Source code |
| randomForest_OriginalModel | Man page Source code |
| ref_combat_impute | Man page Source code |
| retrain_helper | Source code |
| runTBsigProfiler | Man page Source code |
| score_algorithm | Source code |
| sigAnnotData | Man page |
| signatureBoxplot | Man page Source code |
| signatureGeneHeatmap | Man page Source code |
| signatureHeatmap | Man page Source code |
| signatureROCplot | Man page Source code |
| signatureROCplot_CI | Man page Source code |
| subsetGeneSet | Man page Source code |
| svm_OriginalModel | Man page Source code |
| tableAUC | Man page Source code |
| update_genenames | Source code |
