View source: R/vis_surface_background.R
collayer.from.annot | R Documentation |
Compute surface color layer from annotation or atlas data.
collayer.from.annot(subjects_dir, subject_id, hemi, atlas)
subjects_dir |
character string, the FreeSurfer SUBJECTS_DIR. |
subject_id |
character string, the subject identifier. |
hemi |
character string, one of 'lh', 'rh', or 'both'. |
atlas |
character string, the atlas name. E.g., "aparc", "aparc.2009s", or "aparc.DKTatlas". Used to construct the name of the annotation file to be loaded. |
named hemi list, each entry is a vector of color strings, one color per surface vertex. The coloring represents the atlas data.
You can plot the return value using vis.color.on.subject
.
Other surface color layer:
collayer.bg()
,
collayer.bg.atlas()
,
collayer.bg.meancurv()
,
collayer.bg.sulc()
,
collayer.from.annotdata()
,
collayer.from.mask.data()
,
collayer.from.morphlike.data()
,
collayers.merge()
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