group.label: Retrieve label data for a group of subjects.

In dfsp-spirit/fsbrain: Managing and Visualizing Brain Surface Data

Retrieve label data for a group of subjects.

Description

Load a label (like 'label/lh.cortex.label') for a group of subjects from disk. Uses knowledge about the FreeSurfer directory structure to load the correct file.

Usage

group.label(
  subjects_dir,
  subjects_list,
  label,
  hemi,
  return_one_based_indices = TRUE
)

Arguments

subjects_dir	string. The FreeSurfer SUBJECTS_DIR, i.e., a directory containing the data for all your subjects, each in a subdir named after the subject identifier.
subjects_list	vector of strings. The subject identifiers.
label	string. Name of the label file, without the hemi part (if any), but including the '.label' suffix. E.g., 'cortex.label' for '?h.cortex.label'
hemi	string, one of 'lh' or 'rh'. The hemisphere name. Used to construct the names of the label data files to be loaded.
return_one_based_indices	logical. Whether the indices should be 1-based. Indices are stored zero-based in the file, but R uses 1-based indices. Defaults to TRUE, which means that 1 will be added to all indices read from the file before returning them.

Value

named list of integer vectors with label data: Each name is a subject identifier from subjects_list, and the values are lists of the vertex indices in the respective label. See 'return_one_based_indices' for important information.

See Also

Other label data functions: labeldata.from.mask(), mask.from.labeldata.for.hemi(), subject.label()

Examples

## Not run: 
   fsbrain::download_optional_data();
   subjects_dir = fsbrain::get_optional_data_filepath("subjects_dir");
   subjects_list = c("subject1", "subject2");
   labels = group.label(subjects_dir, subjects_list, 'cortex.label', "lh");

## End(Not run)

dfsp-spirit/fsbrain documentation built on Nov. 28, 2024, 10:29 a.m.