qc.report.html: Create visual quality check report from QC result.

In dfsp-spirit/fsbrain: Managing and Visualizing Brain Surface Data

Create visual quality check report from QC result.

Description

Create visual quality check report from QC result.

Usage

qc.report.html(
  subjects_dir,
  subjects_list,
  out_dir = "fsbrain_qc_report",
  subjects_metadata = list(),
  qc = NULL,
  ...
)

Arguments

subjects_dir	string. The FreeSurfer SUBJECTS_DIR, i.e., a directory containing the data for all your subjects, each in a subdir named after the subject identifier.
subjects_list	string vector. A vector of subject identifiers that match the directory names within subjects_dir.
out_dir	character string, path to output dir. The last directory part will be created if it does not exist (but not recursively).
subjects_metadata	named list, keys can be subjects from subjects_list. Each key can hold another named list of strings, represeting arbitrary metadata for that subject that will be displayed in the report.
qc	optional qc result. If NULL, a QC report is created using standard settings 'aparc' and 'thickness'.
...	passed on to subject.report.html.

Examples

## Not run: 
s = sjld("~/data/IXI_min/mri/freesurfer");
s$l = s$l[1:100]; # first few subjects are enough
fsbrain:::qc.report.html(s$d, s$l);

## End(Not run)

dfsp-spirit/fsbrain documentation built on Nov. 28, 2024, 10:29 a.m.