vol.boundary.mask: Compute foreground pixels over the whole 3D imagestack.
In dfsp-spirit/fsbrain: Managing and Visualizing Brain Surface Data
vol.boundary.mask R Documentation
Compute foreground pixels over the whole 3D imagestack.
Description
Compute, over all images in a stack along an axis, the foreground and background pixels as a binary mask. A pixel is a 'foreground' pixel iff its value is greater than the 'threshold' parameter in at least one of the slices. A pixel is a 'background' pixel iff its value is below or euqal to the 'threshold' in all slices.
Usage
vol.boundary.mask(volume, plane = 1L, threshold = 0L)
Arguments
volume
a 3D image volume
plane
integer vector of length 2 or something that will be turned into one by vol.plane.axes.
threshold
numerical, the threshold intensity used to separate background and foreground. All voxels with intensity values greater than this value will be considered 'foreground' voxels.
Value
integer 2D matrix with dimensions of a slice of the volume. Positions set to 1 are 'foreground' pixels and positions set to 0 are 'background' pixels (see 'Details' section).
dfsp-spirit/fsbrain documentation built on Nov. 28, 2024, 10:29 a.m.
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| vol.boundary.mask | R Documentation |
Compute foreground pixels over the whole 3D imagestack.
Description
Compute, over all images in a stack along an axis, the foreground and background pixels as a binary mask. A pixel is a 'foreground' pixel iff its value is greater than the 'threshold' parameter in at least one of the slices. A pixel is a 'background' pixel iff its value is below or euqal to the 'threshold' in all slices.
Usage
vol.boundary.mask(volume, plane = 1L, threshold = 0L)
Arguments
volume |
a 3D image volume |
plane |
integer vector of length 2 or something that will be turned into one by |
threshold |
numerical, the threshold intensity used to separate background and foreground. All voxels with intensity values greater than this value will be considered 'foreground' voxels. |
Value
integer 2D matrix with dimensions of a slice of the volume. Positions set to 1 are 'foreground' pixels and positions set to 0 are 'background' pixels (see 'Details' section).
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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