API for dhelekal/mmdiff3
Statistical Testing for ChIP-Seq data sets
| Global functions | |
|---|---|
| Cfp1-Peaks | Man page |
| Contrast | Man page |
| Contrast,DBAmmd-method | Man page |
| Counts | Man page |
| Counts,DBAmmd-method | Man page |
| DBAmmd | Man page Source code |
| DBAmmd-Accessors | Man page |
| DBAmmd-class | Man page |
| Dists | Man page |
| Dists,DBAmmd-method | Man page |
| Genome | Man page |
| Genome,DBAmmd-method | Man page |
| Hists | Man page |
| Hists,DBAmmd-method | Man page |
| MMD | Man page |
| Reads | Man page |
| Reads,DBAmmd-method | Man page |
| Regions | Man page |
| Regions,DBAmmd-method | Man page |
| Samples | Man page |
| Samples,DBAmmd-method | Man page |
| addHists | Source code |
| buildMMDLUT | Source code |
| chooseSigma | Source code |
| compDists | Man page Source code |
| compHist | Source code |
| compHists | Man page Source code |
| compIDsFromContrasts | Source code |
| compKernelMatrix | Source code |
| compPeakMatrix | Source code |
| compPvals | Man page Source code |
| compute.pvalues | Source code |
| computeDist | Source code |
| computeDist_stoch | Source code |
| createJoint | Source code |
| createPeakMatrix | Source code |
| createTSContrast | Man page Source code |
| createTSContrastBycondition | Man page Source code |
| determineGroupComps | Source code |
| detpvals | Source code |
| estimateFragmentCenters | Man page Source code |
| findComps | Source code |
| getPeakIds4shift | Source code |
| getPeakReads | Man page Source code |
| getReads | Source code |
| getReadsWrapper | Source code |
| getShift | Source code |
| getcompIDs | Source code |
| isParallel | Source code |
| kernelSum | Source code |
| kernelSumSymmetric | Source code |
| metaData | Man page |
| metaData,DBAmmd-method | Man page |
| mm9-Genes | Man page |
| mmd | Source code |
| mmdWrapper | Source code |
| numPeaks | Man page |
| numPeaks,DBAmmd-method | Man page |
| numSamples | Man page |
| numSamples,DBAmmd-method | Man page |
| plotDISTS4Peak | Man page Source code |
| plotDists | Man page Source code |
| plotPeak | Man page Source code |
| plotTimeSeries | Man page Source code |
| reportResults | Man page Source code |
| runShinyMMDiff2 | Man page Source code |
| server.MMDiff2 | Man page Source code |
| setContrast | Man page |
| setContrast,DBAmmd-method | Man page |
| setDists | Source code |
| setRegions | Man page |
| setRegions,DBAmmd-method | Man page |
| shiftReads | Source code |
| sortReads | Source code |
| sortReadsWrapper | Source code |
| subSet | Man page |
| subSet,DBAmmd-method | Man page |
| ui.MMDiff2 | Man page Source code |
| vectorized_pdist.sq | Source code |
