Files in dhelekal/mmdiff3
Statistical Testing for ChIP-Seq data sets
.gitattributes
.gitignore
DESCRIPTION
NAMESPACE
NEWS
R/AllGenerics.R
R/DBAmmd-Accessors.R
R/DBAmmd-Class.R
R/DBAmmd-Showmethods.R
R/DBAmmd-internal.R
R/MMDiff2_data.R
R/R.Rproj
R/compDists.R
R/compHists.R
R/compPvals.R
R/createPeakMatrix.R
R/createTSContrast.R
R/estimateFragmentCenters.R
R/getPeakReads.R
R/helperFcts.R
R/plotDISTS4Peak.R
R/plotDists.R
R/plotPeak.R
R/plotTimeSeries.R
R/reportResults.R
R/runMMD.R
R/runShinyMMDiff2.R
R/server.R
R/subSet.R
R/ui.R
README.md
data/Cfp1-Peaks.RData
data/MMD.RData
data/datalist
data/mm9-Genes.RData
man/Cfp1-Peaks.Rd
man/DBAmmd-Accessors.Rd
man/DBAmmd-class.Rd
man/MMD.Rd
man/compDists.Rd
man/compHists.Rd
man/compPvals.Rd
man/createTSContrast.Rd
man/createTSContrastBycondition.Rd
man/estimateFragmentCenters.Rd
man/getPeakReads.Rd
man/mm9-Genes.Rd
man/myGeneric.Rd
man/plotDISTS4Peak.Rd
man/plotDists.Rd
man/plotPeak.Rd
man/plotTimeSeries.Rd
man/reportResults.Rd
man/runShinyMMDiff2.Rd
man/server.MMDiff2.Rd
man/ui.MMDiff2.Rd
src/CMakeLists.txt
src/LICENSE
src/Makefile
src/Makefile.common
src/Makefile.win
src/R_init.cpp
src/R_init.hpp
src/cmake/modules/FindLibR.cmake
src/kernel_function.hpp
src/mmd.cpp
src/mmd.hpp
src/mmdiff3.cpp
src/mmdiff3.hpp
src/rbf_joint_discrete_kernel.cpp
src/rbf_joint_discrete_kernel.hpp
src/rbf_joint_kernel.cpp
src/rbf_joint_kernel.hpp
vignettes/MMDiff2.Rnw
vignettes/ShinyMMDiff2Demo.png
vignettes/framed.sty
