plotDISTS4Peak: plotDISTS4Peak

In dhelekal/mmdiff3: Statistical Testing for ChIP-Seq data sets

Description

showing all distances for one region

Usage

plotDISTS4Peak(MD, Peak.id, dist.method = "MMD", whichContrast = 1,
  Zoom = TRUE, xlim = NULL, ylim = NULL, xlog10 = TRUE, title = NULL)

Arguments

MD	DBAmmd Object. This Object can be created using DBAmmd().
Peak.id	Peak id to specify which Peak to plot. (coresponding to names of Regions(MD))
dist.method	specify method used for distances between samples. Currently only Maximum Mean Discrepancy (MMD) and Kolmogorov-Smirnov (KS) implemented. (DEFAULT: 'MMD')
whichContrast	index determining which of the set contrast should be used. (DEFAULT: 1)
Zoom	(DEFAULT: TRUE)
xlim	specify x range (DEFAULT: NULL)
ylim	specify y range (DEFAULT: NULL)
xlog10	should x range be plotted in log10 scale (DEFAULT: TRUE)
title	(DEFAULT: NULL)

Examples

dev.off()
load(system.file("data/MMD.RData", package="MMDiff2"))
plotDISTS4Peak(MMD,Peak.id = '6',dist.method='MMD', whichContrast=1)

dhelekal/mmdiff3 documentation built on July 25, 2019, 8:18 p.m.