FindMethylatedCytosines: Highlighting all Methylated Cytosines
In diannamcallister/MethylExpress: Visual investigation of physical characteristics of methylation of DNA
Description
Usage
Arguments
Value
References
Examples
Description
A function that returns a visual output highlighting all methylated cytosines.
Usage
1
findMethylatedCytosines(orig, bisulfite)
Arguments
orig
A string of nucleotides of the original DNA sequence with no
modifications, meaning before bisulfite conversion
bisulfite
A string of nucleotides of the DNA sequence after
bisulfite conversion
Value
A visual output of all nucleotides given, where the methylated
cytosines are highlighted.
References
Kevin Ushey, JJ Allaire, Hadley Wickham and Gary Ritchie (2020). rstudioapi:
Safely Access the RStudio API. R package version 0.13.
https://CRAN.R-project.org/package=rstudioapi
Examples
1
2
3
4
5
## Not run:
findMethylatedCytosines(MethylationObservation$originalDNA,
MethylationObservation$bisulfite)
## End(Not run)
diannamcallister/MethylExpress documentation built on Dec. 31, 2020, 11:19 p.m.
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Description Usage Arguments Value References Examples
Description
A function that returns a visual output highlighting all methylated cytosines.
Usage
1 | findMethylatedCytosines(orig, bisulfite)
|
Arguments
orig |
A string of nucleotides of the original DNA sequence with no modifications, meaning before bisulfite conversion |
bisulfite |
A string of nucleotides of the DNA sequence after bisulfite conversion |
Value
A visual output of all nucleotides given, where the methylated cytosines are highlighted.
References
Kevin Ushey, JJ Allaire, Hadley Wickham and Gary Ritchie (2020). rstudioapi: Safely Access the RStudio API. R package version 0.13. https://CRAN.R-project.org/package=rstudioapi
Examples
1 2 3 4 5 | ## Not run:
findMethylatedCytosines(MethylationObservation$originalDNA,
MethylationObservation$bisulfite)
## End(Not run)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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