Man pages for dicook/phyViz
Phylogenetic Visualization
| buildAncDesCoordDF | Returns the coordinate positions of all ancestors and... |
| buildAncDesTotalDF | Returns data frame with plot coordinates of all ancestors and... |
| buildEdgeTotalDF | Build the edges in the tree graph. |
| buildPathDF | Build data frame for path representation |
| getAncestors | Returns a list of the ancestors of a particular variety (if... |
| getBasicStatistics | Determine basic statistics of the graph object |
| getChild | Returns the children of a particular variety (if they exist) |
| getDegree | Determine the degree between two varieties |
| getDescendants | Returns a list of the descendants of a particular variety (if... |
| getEdges | Returns edges (vertex names and edge weights) for a tree |
| getNodes | Returns the nodes for a tree |
| getParent | Returns the parents of a particular variety (if they exist) |
| getPath | Determine the path between two varieties |
| getYear | Determine the year of a variety |
| isChild | Determine if a variety is a child of another |
| isParent | Determine if a variety is a parent of another |
| nodeToDF | Returns the data frame representation of all ancestors and... |
| plotAncDes | Returns the image object to show the ancestors and... |
| plotDegMatrix | Returns the image object to show the heat map of degrees... |
| plotPath | Construct the graphic object of the path |
| plotPathOnTree | Build the image object of the whole tree with the path... |
| plotYearMatrix | Returns the image object to show the heat map of years... |
| treeToIG | Process the tree graph |
