plotPathOnTree: Build the image object of the whole tree with the path...
In dicook/phyViz: Phylogenetic Visualization

Description Usage Arguments See Also Examples

This function requires a path and the ig object, and plots the entire tree with the path highlighted. The image will correctly position the node labels with x-axis representing the node year, and y-axis representing the node path index. Light grey edges between two nodes represent parent-child relationships between those nodes. To enhance the visual understanding of how the path-of-interest fits into the entire graph structure, the nodes within the path are labelled in boldface, and connected with light-green boldfaced edges.

1	plotPathOnTree(path, tree, ig, binVector = sample(1:12, 12))

`path`	path as returned from getPath() or a vector of two variety names which exist in ig
`tree`	the data tree (in data frame format)
`ig`	the graph representation of the data tree (in igraph format)
`binVector`	vector of numbers between 1 and length(binVector), each repeated exactly once

http://www.r-project.org for iGraph information

getPath for information on input path building

data(sbTree)
ig = treeToIG(sbTree)
path = getPath("Brim","Bedford",ig,sbTree)
binVector=sample(1:12, 12)
plotTotalImage <- plotPathOnTree(path=path, tree=sbTree, ig=ig, binVector=sample(1:12, 12))
plotTotalImage