Phylogenetic Visualization

buildAncDesCoordDF | Returns the coordinate positions of all ancestors and... |

buildAncDesTotalDF | Returns data frame with plot coordinates of all ancestors and... |

buildEdgeTotalDF | Build the edges in the tree graph. |

buildPathDF | Build data frame for path representation |

getAncestors | Returns a list of the ancestors of a particular variety (if... |

getBasicStatistics | Determine basic statistics of the graph object |

getChild | Returns the children of a particular variety (if they exist) |

getDegree | Determine the degree between two varieties |

getDescendants | Returns a list of the descendants of a particular variety (if... |

getEdges | Returns edges (vertex names and edge weights) for a tree |

getNodes | Returns the nodes for a tree |

getParent | Returns the parents of a particular variety (if they exist) |

getPath | Determine the path between two varieties |

getYear | Determine the year of a variety |

isChild | Determine if a variety is a child of another |

isParent | Determine if a variety is a parent of another |

nodeToDF | Returns the data frame representation of all ancestors and... |

plotAncDes | Returns the image object to show the ancestors and... |

plotDegMatrix | Returns the image object to show the heat map of degrees... |

plotPath | Construct the graphic object of the path |

plotPathOnTree | Build the image object of the whole tree with the path... |

plotYearMatrix | Returns the image object to show the heat map of years... |

treeToIG | Process the tree graph |

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