API for dieterich-lab/JACUSA2helper
Post-processing for JACUSA2 output

Global functions
.as	Source code
.create_result	Source code
.extract_cond_repl	Source code
.fill_empty	Source code
.find_cond_count	Source code
.guess_cond_count	Source code
.guess_file_type	Source code
.helper	Source code
.mask_all	Source code
.mask_any	Source code
.matches	Source code
.merge_cond	Source code
.type2prefix	Source code
.unpack	Source code
.unpack_cols	Source code
.unpack_indels	Source code
All	Man page Source code
Allnum	Man page Source code
Any	Man page Source code
DARTseq	Man page
HIVRT_call2	Man page
HIVRT_rt_arrest	Man page
JACUSA2helper	Man page
MazF_FTO	Man page
SIIIRTMg_call2	Man page
SIIIRTMg_rt_arrest	Man page
SIIIRTMn_call2	Man page
SIIIRTMn_rt_arrest	Man page
Zhou2018_call2	Man page
Zhou2018_rt_arrest	Man page
add_arrest_rate	Man page Source code
arrest_rate	Man page Source code
base_call	Man page Source code
base_count	Man page Source code
base_ratio	Man page Source code
base_sub	Man page Source code
clean_tag	Man page Source code
coverage	Man page Source code
create_data	Man page Source code
expand_tag	Man page Source code
extend	Man page Source code
fast_unpack_info	Man page Source code
filter_artefact	Man page Source code
fix_coords	Source code
gather_repl	Man page Source code
get_info_keys	Man page Source code
get_motif	Man page Source code
id	Man page Source code
is_DRACH	Man page Source code
lapply_cond	Man page Source code
lapply_repl	Man page Source code
learn_nmf	Man page Source code
m6a_miclip	Man page
m6a_nmf_reduced	Man page
m6a_nmf_results	Man page
mapply_repl	Man page Source code
mask_sub	Man page Source code
max_observed_bc	Man page Source code
merge_sub	Man page Source code
non_ref_ratio	Man page Source code
observed_bc	Man page Source code
predict_mods	Man page Source code
rdd	Man page
read_result	Man page Source code
read_results	Man page Source code
reduce_coef	Man page Source code
rnam	Man page
robust	Man page Source code
rrd	Man page
sub_counts	Man page Source code
sub_ratio	Man page Source code
unpack_info	Man page Source code
variant_bc	Man page Source code
write_bedGraph	Man page Source code