rnam: rRNA modification map of rRNAs according to Taika et al.
In dieterich-lab/JACUSA2helper: Post-processing for JACUSA2 output
rnam R Documentation
rRNA modification map of rRNAs according to Taika et al.
Description
Data (18S, 28S, and 5.8S) has been extracted from retrieved from PMID: 30202881.
Usage
data(rnam)
Format
a data.frame with 3 elements:
rrna: String, either "18S", "28S", or "5.8S"
pos: Numeric 1-index position.
base: String, reference base(A, C, G, T) or modification(ac4C, AM, Cm,
Gm, m1A, m1acp3pusU, m3U, m5C, m62A, m6A, m7G, ND, psU, psUm, Um)
References
Landscape of the complete RNA chemical modifications in the human 80S ribosome
Masato Taoka, Yuko Nobe, Yuka Yamaki, Ko Sato, Hideaki Ishikawa,
Keiichi Izumikawa, Yoshio Yamauchi, Kouji Hirota, Hiroshi Nakayama,
Nobuhiro Takahashi et al.
Nucleic Acids Research, Volume 46, Issue 18, 12 October 2018, Pages 9289–9298,
https://doi.org/10.1093/nar/gky811
dieterich-lab/JACUSA2helper documentation built on March 1, 2023, 12:09 a.m.
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| rnam | R Documentation |
rRNA modification map of rRNAs according to Taika et al.
Description
Data (18S, 28S, and 5.8S) has been extracted from retrieved from PMID: 30202881.
Usage
data(rnam)
Format
a data.frame with 3 elements:
rrna: String, either "18S", "28S", or "5.8S"
pos: Numeric 1-index position.
base: String, reference base(A, C, G, T) or modification(ac4C, AM, Cm, Gm, m1A, m1acp3pusU, m3U, m5C, m62A, m6A, m7G, ND, psU, psUm, Um)
References
Landscape of the complete RNA chemical modifications in the human 80S ribosome Masato Taoka, Yuko Nobe, Yuka Yamaki, Ko Sato, Hideaki Ishikawa, Keiichi Izumikawa, Yoshio Yamauchi, Kouji Hirota, Hiroshi Nakayama, Nobuhiro Takahashi et al. Nucleic Acids Research, Volume 46, Issue 18, 12 October 2018, Pages 9289–9298, https://doi.org/10.1093/nar/gky811
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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