README.md

In dieterich-lab/JACUSA2helper: Post-processing for JACUSA2 output

Overview

Auxiliary R package for the assessment of JACUSA1.x and JACUSA2.x results.

Install

Install JACUSA2helper by either downloading a specific release or install it directly from the repository via devtools.

devtools (local)

1. Make sure, devtools is installed
2. Download JACUSA2helper from releases
3. Change to directory where JACUSA2helper was saved
4. Start R
5. Install downloaded package by running: devtools::install_local("<DOWNLOADED-FILE>", dependencies = TRUE, build_vignettes = TRUE)

devtools (github)

1. Make sure, devtools is installed
2. Start R
3. Run install_github("dieterich-lab/JACUSA2helper", dependencies = TRUE, build_vignettes = TRUE)

Documentation

Check vignettes: If vignettes or code examples do not run, try to add library(plyranges)

• vignette("Introduction to JACUSA2helper")
• vignette("Analysis of DART-seq with JACUSA2helper")
• vignette("Analysis of m6A mapping by MazF with JACUSA2helper")
• vignette("Introduction to meta conditions with JACUSA2helper")
• Nanopore analysis

dieterich-lab/JACUSA2helper documentation built on March 1, 2023, 12:09 a.m.