base_sub: Calculates reference base to base call (base substitution).

In dieterich-lab/JACUSA2helper: Post-processing for JACUSA2 output

Calculates reference base to base call (base substitution).

Description

Calculates and formats base changes for ref and bc. All elements in ref must be all length 1.

Usage

base_sub(bases, ref)

Arguments

bases	vector of base calls or tibble of base call counts.
ref	vector of reference bases.

Value

vector of formatted base call substitutions.

Examples

bases <- c("AG", "G", "C", "G")
ref <- c("A", "A", "C", "A")
base_sub(ref, bases)

dieterich-lab/JACUSA2helper documentation built on March 1, 2023, 12:09 a.m.