Man pages for digiYozhik/msc_thesis
Functions to support master thesis

boxplots_with_checksBoxplots with checks alongside the boxes
calculateH2Compute the broad-sense heritability from a mixed model...
crossValidateCross-validation function
CVcommitFunction to make a CV scheme based on a commited test set.
CVincompleteTrialFunction to make a CV scheme based on random sampling of...
CVrandomAccrossFactorFunction to make a CV scheme based on random sampling of...
CVrandomByIDFunction to make a CV scheme based on random sampling of...
CVrandomWithinFactorFunction to make a CV scheme based on random sampling of...
data-exampleCVExample data for CV functionalities used in thesis
dataframe.to.listConvert data frame to list
data-GRealization of the G-matrix used in thesis
data-genotypesRaw SNP marker data used in thesis
data-MCleaned numeric SNP marker data used in thesis
data-MrawNumeric SNP marker data used in thesis
data-PModeled cleaned phenotypic data used in thesis
data-phenotypesRaw phenotype data used in thesis
data-PrawModeled phenotypic data used in thesis
inferenceBGLRFunction to make inference on a cross validation analysis and...
list.to.dataframeTransform a list of data frames to one data frame
LR.test.asremlLikelihood ratio test for two asreml-models.
make_design_rectangularAdd observations to a data frame so that the design is...
makeGMake genomic relationship matrix using Van Raden (2008)
makeZMake a centered (scaled) genetic marker matrix
MaStatThesisRuudMaStatThesisRuud
permuteFunction to generate a table of combinations when applying...
plotCVPlot a CV scheme based on crossValidate function
plotCVThesisDataPlot a CV scheme for the data used in the thesis
plotFieldsCreate a field-layout plot from a data frame.
plotResidualsPlot a series of residual plots obtained from a linear mixed...
plotVariogramPlot variogram from residuals
summarizeInferenceSummarize the inference results from from inferenceBGLR
digiYozhik/msc_thesis documentation built on Dec. 13, 2017, 12:33 a.m.