data-Mraw: Numeric SNP marker data used in thesis
In digiYozhik/msc_thesis: Functions to support master thesis

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Numeric SNP marker data used in thesis

Mraw

The data comes from a field trial that is part of a cotton breeding program. The trial was set up in 2012 across 7 locations in the US Cotton Belt. At every location the same bi-parental BC_3F_2 was grown together with a number of entries serving as checks. Genotypes were obtained for the entries on one locations from a set of genome–wide spread SNP markers which were scored in a bi-allelic way. After quality control, genotypes for 299 cross-entries were obtained for 1088 SNP markers. The observed genotype matrix is converted to allelic content by counting the number of B alleles for every cell in the genotype matrix. The obtained matrix of 0,1,2-counts is called the M matrix.

Ruud Derijcker