Description Usage Arguments Value Author(s) References See Also
Plot a series of residual plots obtained from a linear mixed model
1 2 | plotResiduals(x, residuals, by, rows = "ROW", ranges = "RANGE",
trimVariogram = FALSE, trait = NULL)
|
x |
A data frame that contains at least the columns |
residuals |
Character string specifying the column name of the
residuals in |
by |
Character string specifying the column name for the splitting
factor in |
rows |
Character string specifying the column name with the |
ranges |
Character string specifying the column name with the
|
trimVariogram |
Logical indicating whether to trim the variogram to shorter lag values. Default = "FALSE". |
trait |
Character string specifying the trait name to use in the title for
the plots. Default to |
Produces various diagnostic residual plots. The colors are scaled to be
comparable over different by
-levels (if there are). Four plots are
outputted per location and are shown in the graphical device. The plots are
listed below and detailed about the construction and use is given in
Appendix A in the referred thesis.
Variogram of the residuals for the rows and ranges. By default the lags are limited by 30.
Conditional residual plots, colored by their value and sign.
Scatterplot of the the residuals against the range number conditional on the row number
Scatterplot of the the residuals against the row number conditional on the range number
Ruud Derijcker, Krishna Bondalapati
Derijcker, R. (2015). Investigating incorporation of genotype x environment interaction (G x E) for genomic selection in a practical setting. Unpublished M.Sc. thesis. University of Ghent: Belgium.
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