Files in dinaIssakova/rgenesconverged
A Package for Estimating Probability of Convergent Evolution from Genomic Data

.Rbuildignore

.gitignore

DESCRIPTION

LICENSE

NAMESPACE

R/areCondSatisfied.R R/data.R R/getAlign.R R/getResults.R R/getTreeData.R R/globals.R R/mutProb.R R/plot.R R/probByChance.R R/shinyRgenesconverged.R

R/sysdata.rda

README.Rmd README.md

data/BLOSUM62.rda

data/pam.rda

data/primates.rda

data/smallTree.rda

data/tree.rda

inst/CITATION

inst/extdata/COX2sample.fa

inst/extdata/ISSAKOVA_D_A1.PNG

inst/shiny-scripts/app.R man/BLOSUM62.Rd man/areCondSatisfied.Rd man/convSiteData.Rd man/convertToAA.Rd man/getAlignment.Rd man/getBranchLength.Rd man/getConvergent.Rd man/getMostRecentCommonAncestor.Rd man/getSeq.Rd man/getf.Rd man/getm.Rd man/mapLetters.Rd man/matrixtoAAString.Rd man/pam.Rd man/primates.Rd man/probOfChange.Rd man/probOfChange1PAM.Rd man/probOfNSitesByChance.Rd man/probOfSiteConfig.Rd man/rgenesconvergedPlot.Rd man/shinyRgenesconverged.Rd man/smallTree.Rd man/tree.Rd

rgenesconverged.Rproj

tests/testthat.R tests/testthat/test_conditionals.R

vignettes/.gitignore

vignettes/rgenesconverged.Rmd

dinaIssakova/rgenesconverged documentation built on Jan. 7, 2020, 4:25 p.m.

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