probOfChange1PAM: probOfChange1PAM
In dinaIssakova/rgenesconverged: A Package for Estimating Probability of Convergent Evolution from Genomic Data
Description
Usage
Arguments
Value
Description
Calculate the probability of one amino acid mutating into another over a distance of 1 PAM.
Usage
1
probOfChange1PAM(pam, AA1, AA2)
Arguments
pam
The PAM matrix (given in ./data)
AA1
The origin amino acid
AA2
The target amino acid
Value
A probability of mutation.
probOfChange(pam, "L", "K")
dinaIssakova/rgenesconverged documentation built on Jan. 7, 2020, 4:25 p.m.
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Description Usage Arguments Value
Description
Calculate the probability of one amino acid mutating into another over a distance of 1 PAM.
Usage
1 | probOfChange1PAM(pam, AA1, AA2)
|
Arguments
pam |
The PAM matrix (given in ./data) |
AA1 |
The origin amino acid |
AA2 |
The target amino acid |
Value
A probability of mutation. probOfChange(pam, "L", "K")
R Package Documentation
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Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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