R/pathway_sets.R

In diogocamacho/rpegeos: Pathway enrichment for gene expression signatures

#' Pathway sets
#'
#' The pathway sets provided have been collated from multiple sources, including [CPDB](http://cpdb.molgen.mpg.de), [MSigDB](http://software.broadinstitute.org/gsea/msigdb/collections.jsp), and others. The following are the gene sets currently avaiable in `rPEGEOS`:
#'
#' 1: KEGG
#' 2: PharmGKB
#' 3: Small Molecule Pathway DB
#' 4: WikiPathways
#' 5: SignaLink
#' 6: HumanCyc
#' 7: BioCarta
#' 8: Reactome
#' 9: INOH
#' 10: Pathway Interaction Database
#' 11: NetPath
#' 12: EHMN
#' 13: Gene Ontology: Biological Processes
#' 14: Gene Ontology: Cellular Component
#' 15: Gene Ontology: Molecular Function
#' 16: MSigDB Hallmark
#'
#' More data sets can be appended to the current set to explore other biologies. The availability of these sources is dependent on their own maintenance.
"pathway_sets"