get_parents: Get parent nodes of a specific ontology term

In dlindholm/oboe: Open Biomedical Ontology Extraction Tools (oboe)

Description

Will look up in the hierarchy until the root is reached.

Usage

get_parents(ontology, id, root = "DOID:4", include_entry = FALSE)

Arguments

ontology	A list (of class ontology) in which to look
id	The identifier of the term to look up (character string)
root	The identifier of the root entry. Defaults to "DOID:4", which is the term "disease" in the disease ontology (http://www.disease-ontology.org/).
include_entry	Should the term to look up be included in the results? Defaults to FALSE

Value

Outputs a dataframe with identifiers, descriptions, and depth.

Author(s)

Daniel Lindholm

dlindholm/oboe documentation built on May 15, 2019, 9:18 a.m.