map_to_id: Map ICD, OMIM, SNOMED or any cross-reference code to an...
In dlindholm/oboe: Open Biomedical Ontology Extraction Tools (oboe)
Description
Usage
Arguments
Value
Author(s)
Description
Will look up a code within the "xref" part of an ontology database
and translate to an ontology identifier. If several identifiers are found, the
one that is deepest in the tree will be returned. If there are multiple entries
within the same depth, the first identifier in the list will be returned.
Usage
1
map_to_id(ontology, code, from = "ICD10CM", root = "DOID:4")
Arguments
ontology
a list (of class ontology) in which to look
code
the code to look-up
from
Which classification is 'code' apart of? Defaults to "ICD10CM",
other options (when using the disease ontology database) include "OMIM", "MSH",
"SNOMEDCT_US_2016-03-01", etc.
Value
Outputs a character string containing the mapped identifier.
Author(s)
Daniel Lindholm
dlindholm/oboe documentation built on May 15, 2019, 9:18 a.m.
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Description Usage Arguments Value Author(s)
Description
Will look up a code within the "xref" part of an ontology database and translate to an ontology identifier. If several identifiers are found, the one that is deepest in the tree will be returned. If there are multiple entries within the same depth, the first identifier in the list will be returned.
Usage
1 | map_to_id(ontology, code, from = "ICD10CM", root = "DOID:4")
|
Arguments
ontology |
a list (of class ontology) in which to look |
code |
the code to look-up |
from |
Which classification is 'code' apart of? Defaults to "ICD10CM", other options (when using the disease ontology database) include "OMIM", "MSH", "SNOMEDCT_US_2016-03-01", etc. |
Value
Outputs a character string containing the mapped identifier.
Author(s)
Daniel Lindholm
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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