get.max.geno: Get the genotype with the highest probability
In dmgatti/DOQTL: Genotyping and QTL Mapping in DO Mice
get.max.geno R Documentation
Get the genotype with the highest probability
Description
For each sample at each marker, return the genotype state with the highest probability.
Usage
get.max.geno(probs)
Arguments
probs
Three dimensional numeric matrix containing the founder haplotype contributions.
Details
If the maximum probability is greater than 0.75, it is called homozygous. Otherwise, we take the two highest probabilities and call heterozygous.
Value
Character matrix containing the genotype with the highest probability at each locus.
Author(s)
Daniel Gatti
Examples
## Not run: get.max.geno(probs)
dmgatti/DOQTL documentation built on April 7, 2024, 10:35 p.m.
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| get.max.geno | R Documentation |
Get the genotype with the highest probability
Description
For each sample at each marker, return the genotype state with the highest probability.
Usage
get.max.geno(probs)
Arguments
probs |
Three dimensional numeric matrix containing the founder haplotype contributions. |
Details
If the maximum probability is greater than 0.75, it is called homozygous. Otherwise, we take the two highest probabilities and call heterozygous.
Value
Character matrix containing the genotype with the highest probability at each locus.
Author(s)
Daniel Gatti
Examples
## Not run: get.max.geno(probs)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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