get.strains: get.strains

In dmgatti/DOQTL: Genotyping and QTL Mapping in DO Mice

get.strains

Description

Get available strain names for a set of strains from a variant file.

Usage

  get.strains(
  file = "http://cgd.jax.org/tools/SNPtools/Build38/sanger.snps.NCBI38.txt.gz")

Arguments

file	Character, full path to the variants file to use. Default is the file at the Center for Genome Dynamics at The Jackson Laboratory.

Value

Character vector of strain names in the variant file.

Author(s)

Daniel Gatti

Examples

  ## Not run: 
  available.strains = get.strains()
  strains = available.strains[c(2, 5, 8, 9, 13:15, 17)]
  snps = get.variants(chr = 7, start = 103, end = 105, strains = strains)
  
## End(Not run)

dmgatti/DOQTL documentation built on April 7, 2024, 10:35 p.m.