html.report: Create an HTML report for a set of QTL

In dmgatti/DOQTL: Genotyping and QTL Mapping in DO Mice

Create an HTML report for a set of QTL

Description

Given a list of QTL objects, create a set of HTML pages summarizing the QTL.

Usage

  html.report(path, qtl, perms, assoc = FALSE)

Arguments

path	Character string with path to which to write.
qtl	List containing DOQTL objects as produced by scanone.
perms	Numeric vector containing permutation results for the phenotypes.
assoc	Boolean, if TRUE, look for corresponding *.Rdata files containing the names of the qtl in the current working directory and plot the association plots. If FALSE (default), do not plot association mapping analysis.

Details

This function summarizes a set of QTL scans made using scanone. FALSEor each QTL in the qtl list, it creates an HTML page with a QTL plot and coefficient plots for the significant QTL. The permutations are used to assess significance. It then summarizes all of these in a table and creates a summary HTML page and a *.csv file with the QTL results.

Value

No value is returned. HTML report of QTL is written out to the specified directory.

Author(s)

Daniel Gatti

Examples

   ## Not run:  html.report(path, qtl, perms, merge = FALSE) 

dmgatti/DOQTL documentation built on April 7, 2024, 10:35 p.m.